Analyzing cancer stem cell populations in first–time patients enabled researchers to predict who was most likely to suffer a relapse.
Dr. Liran Shlush, who moved to the Weizmann Institute two years ago from Toronto, has uncovered the presence of particular drug–resistant leukemia stem cells that are already present in the diagnostic samples taken when the disease first hits. His research reveals two distinct groups of patients with two different populations of drug–resistant cells that can eventually lead to a recurrence of the leukemia.

Shlush began this work four years ago in the lab of Prof. John Dick in the University of Toronto.

The results were recently published in the journal Nature.

An MD/PhD who specializes in hematology, Shlush continues to work with with leukemia patients in Princess Margaret Cancer Centre in Toronto, as well as traveling once a week to work in Rambam Medical Center in Haifa.

“In recent years,” explains Shlush, “it has been shown that many cancers, including leukemia, begin with ‘cancer stem cells’ – cells that divide and differentiate into various tumor cells. But it was not clear whether such stem cells were also responsible for causing the disease to come back and, if so, exactly what these cells look like.”

To investigate, he and his colleagues obtained tissue samples from leukemia patients in the Princess Margaret Cancer Centre – at least two samples from each patient. One was taken at the time of the original diagnosis, the other when the disease returned. With the help of Dr. Mark Minden and others in the lab, Shlush then conducted whole–genome sequencing on the samples. He and his colleagues looked for signs of dominant mutations that might confer survival on the cells in the sample taken from the relapse, and then checked to see if these mutations showed up anywhere in the original sample as well. Cells in the original sample that contained these mutations, they reasoned, might harbor the seeds of the relapse.

Once they had identified possible candidates for the cancer relapse, the scientists tested a small number of them in mice. These experiments provided clear support for the idea that relapse in leukemia is caused by an existing population of stem cells that survive chemotherapy.

The findings suggested that the majority of leukemia patients fall into one of two groups. A large proportion of patients – around 40% – have just a few drug–resistant cells – around two in a million leukemia cells. These cells are true cancer stem cells, and Shlush says that even though they are rare, the results show they can be potent enough to promote drug–resistant cancer in the mice. A second group has a larger proportion of drug–resistant cells – up to one in five. These cells are somewhere in between the undifferentiated stem cells and fully differentiated adult cells – cells called committed progenitors. This second group has a much higher chance of relapse. Indeed, when the researchers went back and looked at tissue samples from original diagnoses, dividing them into groups by the cells’ appearance, they were able to predict which were most likely to result in a relapse.

In part, cancer stem cells avoid being killed by chemotherapy, because the drugs that target the rapidly–dividing cells characteristic of cancer miss the stem cells, which divide at a more leisurely pace. Many such stem cells also contain pumps that are able to eject the drugs from the cell walls. “Now that we can identify the particular cells that cause the disease to recur and the specific genetic mutations involved, we can improve the means of diagnosing the disease and predicting its course. Hopefully, in the future, we will also develop means of targeting the stem cells bearing these particular mutations, thus preventing the relapse before it can even start,” says Shlush.